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Sequence Alignment/Map (SAM) format #110

Closed isf-bot closed 9 years ago

isf-bot commented 9 years ago

From fcold...@eagle-i.org on October 08, 2012 11:13:59

** Use the form below to request a new term ** ** Scroll down to see a term request example ** Please indicate the label for the proposed term: Sequence Alignment/Map (SAM) format Please provide a textual definition (with source): "The Sequence Alignment/Map (SAM) format is a generic alignment format for storing read alignments against reference sequences, supporting short and long reads (up to 128 Mbp) produced by different sequencing platforms."

from: http://www.ncbi.nlm.nih.gov/pmc/articles/pmc2723002/ Please add an example of usage for proposed term: To be used in the 'Data format' fields

Original issue: http://code.google.com/p/eagle-i/issues/detail?id=122

isf-bot commented 9 years ago

From fcold...@eagle-i.org on October 11, 2012 10:25:12

For more info about SAM: http://samtools.sourceforge.net

isf-bot commented 9 years ago

From fcold...@eagle-i.org on October 11, 2012 10:28:07

SAM would fall under the data type: Genomic alignment data (term suggested by Angel)

isf-bot commented 9 years ago

From sc...@eagle-i.org on October 25, 2012 14:09:40

To be added to ontology patch.

Status: Accepted
Owner: sc...@eagle-i.org

isf-bot commented 9 years ago

From sc...@eagle-i.org on November 05, 2012 15:33:18

Added to patch.

Status: Started

isf-bot commented 9 years ago

From sc...@eagle-i.org on January 15, 2013 13:11:22

Available in February release.

Status: Fixed
Labels: data_format