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isglobal-brge / brge_data_large

Compendium of packages used in BRGE group
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Cannot read obesity.bed file #3

Closed lorenzoFabbri closed 4 years ago

lorenzoFabbri commented 4 years ago

I am using brgedata version 1.10.0 with R version 4.0.2 on Ubuntu 18.04. I am trying to use read.plink with the obesity files (which are not available in the directory of the package, so I downloaded them manually from the GitHub repository). The problem is that when I try to read obesity.bed I receive the following error message:

Error in scan(..., : line 1 did not have 3 elements

Any suggestion? Thank you. @isglobal-brge

lorenzoFabbri commented 4 years ago

Never mind. Apparently the bed file I downloaded from the repository was corrupted. I downloaded it again and now it works just fine.

isglobal-brge commented 4 years ago

Thank you Lorenzo, I am sorry for not having answering your question but I was on holidays without internet access