isovic / graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

https://github.com/lbcb-sci/graphmap2

MIT License

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graphmap installation problem #106

Closed Cynthia0411 closed 2 years ago

Cynthia0411 commented 2 years ago

when I make Graphmap, it warn me with this error: fatal error: sequences/single_sequence.h: No such file or directory

include "sequences/single_sequence.h"

How should I do to install the software package?

isovic commented 2 years ago

Hi, you need to clone the repository recursively to pull all the submodules:

git clone --recursive https://github.com/isovic/graphmap
cd graphmap
make

Best regards, Ivan.