1 soft-clipped base instead of full M (dev-branch anchor mode)

isovic / graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

https://github.com/lbcb-sci/graphmap2

MIT License

178 stars 44 forks source link

1 soft-clipped base instead of full M (dev-branch anchor mode) #11

Closed isovic closed 8 years ago

isovic commented 8 years ago

When mapping a read to itself, the final alignment is not all matches, but (N - 1) match base, and 1 S base.

isovic commented 8 years ago

Fixed and merged with master.