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isovic / graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/graphmap2
MIT License
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compilation problem #29

Closed noncodo closed 7 years ago

noncodo commented 8 years ago

I'm getting the following error (gcc-4.8) on a Mac: ld: warning: directory not found for option '-Lcodebase/seqlib/src/libs/libdivsufsort-2.0.1/build/lib' Should it be ? : codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/

andreas-wilm commented 8 years ago

Hey Martino,

Sorry, I can't reproduce this. Which commit are you using? Did you run a make clean first by any chance? And, did you use an extra option to make?

Thanks, Andreas

isovic commented 7 years ago

Hi Martino, any progress on this? Just in case this isn't resolved, before running make run make modules to fetch all the submodules required by the repo. Best regards, Ivan.