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isovic / graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/graphmap2
MIT License
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Compilation error mac #39

Closed mbhall88 closed 7 years ago

mbhall88 commented 7 years ago

Getting this error when running make mac ld: warning: directory not found for option '-Lcodebase/seqlib/src/libs/libdivsufsort-2.0.1/build/lib

It looks like this isn't actually a folder (I guess the error is saying that already). Is it supposed to be libdivsufsort-2.0.1-64bit/ perhaps?

isovic commented 7 years ago

Hi Michael, before compiling, did you run make modules? This will initialize all required submodules. Best regards, Ivan.

mbhall88 commented 7 years ago

Hi Ivan, Yes I ran the following commands immediately prior: git clone https://github.com/isovic/graphmap.git
cd graphmap make modules make mac In that exact order. Kind Regards, Michael

isovic commented 7 years ago

Oh, I see, it's a leftover from an older version, before I trimmed down libdivsufsort. Can you try a git pull now and let me know? Thanks! Best regards, Ivan.

mbhall88 commented 7 years ago

Ok, thought it might have been something like that. Ill give it a go in the morning and let you know how I go.

King Regards, Michael

mbhall88 commented 7 years ago

Excellent. Works fine now. Thanks for that. Kind Regards, Michael