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isovic / graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/graphmap2
MIT License
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GOMP_4.0 not found #45

Closed wzylin closed 7 years ago

wzylin commented 7 years ago

Hi, I encounter an problem when I run the graphmap for alignment: graphmap: /usr/lib/x86_64-linux-gnu/libgomp.so.1: version `GOMP_4.0' not found (required by graphmap)

I compiled the graphmap using gcc-6.2.0 which install at home/user directory. The default version of gcc on my server is 4.6. Is there any way to redirect the graphmap to find the libgomp.so.1 from other directory? or how can I solve this problem?

Thank you!

andreas-wilm commented 7 years ago

Hi Wzylin,

please try adding the GCC library (lib or lib64) directory to your LD_LIBRARY_PATH, i.e. export LD_LIBRARY_PATH=$HOME/your-path-to-gcc-6.2/lib:$LD_LIBRARY_PATH

Andreas

wzylin commented 7 years ago

Dear Andreas, Thank you for your kind help. Problem solved!

tiagobrc commented 6 years ago

This solved my problem as well! Thanks.