GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
I can see that GraphMap performs soft-clipping on the alignment, but I haven't observed any hard-clipping so far in neither the code nor my alignments.
Does this mean that hard-clipping is not considered in the alignment and I can not observe "H" in the cigar output?
Hi,
I can see that GraphMap performs soft-clipping on the alignment, but I haven't observed any hard-clipping so far in neither the code nor my alignments. Does this mean that hard-clipping is not considered in the alignment and I can not observe "H" in the cigar output?
Thank you, Natasha