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GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/graphmap2
MIT License
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Not able to install Graphmap ? #96

Open pinninti19 opened 5 years ago

pinninti19 commented 5 years ago

HI,

I'm trying to install graphmap manually, after giving make command, facing the error ./src/alignment/alignment.h:20:10: fatal error: sequences/single_sequence.h: No such file or directory

I provided GCC 7.3 version, how to rectify this error.

make Makefile:100: " WARNING g++ minor version <7 " mkdir -p obj_linux/src/alignment/ g++ -static-libgcc -static-libstdc++ -D__cplusplus=201103L -I"./src/" -I"/usr/include/" -I"codebase/seqlib/src/libs/seqan-library-2.0.1/include" -I"codebase/seqlib/src/libs/libdivsufsort-2.0.1-64bit/" -DRELEASE_VERSION -O3 -fdata-sections -ffunction-sections -c -fmessage-length=0 -ffreestanding -fopenmp -m64 -std=c++11 -Werror=return-type -pthread -o obj_linux/src/alignment/alignment.o src/alignment/alignment.cc In file included from src/alignment/alignment.cc:8:0: ./src/alignment/alignment.h:20:10: fatal error: sequences/single_sequence.h: No such file or directory

include "sequences/single_sequence.h"

      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~

compilation terminated. make: *** [obj_linux/src/alignment/alignment.o] Error 1

Thanks!

lvxuan96 commented 3 years ago

I met the same issue with you

MeiHsysu commented 2 years ago

I met the same issue too.