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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
271 stars 49 forks source link

report an issue when installing racon #100

Closed tigerxu closed 5 years ago

tigerxu commented 5 years ago

Hi, I met a problem when installing the latest racon. The details are listed below

zhuofei@zhuofei-VirtualBox:~/install/racon-master/build$ cmake -DCMAKE_BUILD_TYPE=Release -Dracon_build_wrapper=ON .. -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Error at CMakeLists.txt:23 (add_subdirectory): The source directory

/home/zhuofei/install/racon-master/vendor/bioparser

does not contain a CMakeLists.txt file.

CMake Error at CMakeLists.txt:26 (add_subdirectory): The source directory

/home/zhuofei/install/racon-master/vendor/spoa

does not contain a CMakeLists.txt file.

CMake Error at CMakeLists.txt:29 (add_subdirectory): The source directory

/home/zhuofei/install/racon-master/vendor/thread_pool

does not contain a CMakeLists.txt file.

CMake Error at CMakeLists.txt:32 (add_subdirectory): The source directory

/home/zhuofei/install/racon-master/vendor/edlib

does not contain a CMakeLists.txt file.

CMake Error at CMakeLists.txt:69 (add_subdirectory): The source directory

/home/zhuofei/install/racon-master/vendor/rampler

does not contain a CMakeLists.txt file.

-- Configuring incomplete, errors occurred! See also "/home/zhuofei/install/racon-master/build/CMakeFiles/CMakeOutput.log".

Any suggestion to fix this is very appreciated!

Zhuofei

rvaser commented 5 years ago

Hi Zhuofei, run git submodule update --init --recursive.

Best regards, Robert

tigerxu commented 5 years ago

Hi Robert,

Many thanks for your advice! Works!

Best wishes Zhuofei

On Mon, 24 Dec 2018 at 13:24, Robert Vaser notifications@github.com wrote:

Hi Zhuofei, run git submodule update --init --recursive.

Best regards, Robert

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