Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
I have a question that I haven't been able to find information about. Is Racon able to handle soft or hardmasked bases? I'm having some issues were paired SNPs and indels are impossible to error-correct using illumina data. I think this could be resolved by finding and masking the SNPs, leaving the indels to be corrected. Is this feasible using Racon?
Hello,
Thank you for developing this great software.
I have a question that I haven't been able to find information about. Is Racon able to handle soft or hardmasked bases? I'm having some issues were paired SNPs and indels are impossible to error-correct using illumina data. I think this could be resolved by finding and masking the SNPs, leaving the indels to be corrected. Is this feasible using Racon?
Best regards Jon