Open wonaya opened 5 years ago
Hello, you have to run racon on sample data either with:
racon -u --threads 48 sample_reads.fastq sample_overlaps.paf sample_layout.fasta
or
racon -u --threads 48 -f sample_reads.fastq sample_ava_overlaps.paf sample_reads.fastq
sample_reference.fasta
is used to calculate the edit distance between the consensus and the actual reference. You can also build racon_test which will run racon automatically on the test data. To obtain it add -Dracon_build_tests=ON
while running cmake
(run make
afterwards).
Best regards, Robert
Thank you!
Hi, I am testing racons with the test files you have on repository. I was wondering if you could help.
Currently getting error like this: $ racon -u --threads 48 sample_reads.fastq sample_overlaps.paf sample_reference.fasta WARNING: Not mounting /var/tmp (already mounted in container) [racon::Polisher::initialize] loaded target sequences [racon::Polisher::initialize] loaded sequences [racon::Polisher::initialize] error: empty overlap set! $ racon --version 1.3.2