Open Timothy-Amos opened 5 years ago
Hello, the error might also indicate that an inadequate value has been passed to some memory allocation function. No idea how or what caused it as file parsing went well. You can first try and map your reads with minimap2 without alignment, and pass the resulting paf to racon. If that does not work, could you share your data so I can investigate locally? Or if that is not possible, would you help me investigate by modifying some parts of the code so we can locate the culprit?
Best regards, Robert
Hi, I got a bad_alloc error:
I don't think it ran out of memory, since I had 1 TB of memory available and the inputs are only ~100 GB each:
I see that some people have been told to rename reads or that long CIGAR reads could be a problem. I haven't investigated either potential issue.
Any thoughts?