polish a region - Githubissues

isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

https://github.com/lbcb-sci/racon

MIT License

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polish a region #135

Open woodoo46 opened 5 years ago

woodoo46 commented 5 years ago

Hi,

Just want to know if we can polish certain region? For example, we have mapped reads on whole human genome, however, we only want to polish certain regions say 1:1000000-2000000, is this possible?

Thanks.

George

rvaser commented 5 years ago

Hi George, unfortunately Racon does not have this option. You could extract the region from the FASTA file, map your reads to it and then employ Racon.

Best regards, Robert