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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
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racon removes telomeric repeats #147

Closed calvincicha closed 4 years ago

calvincicha commented 4 years ago

I have a genome that was sequenced with nanopore technology and assembled with CANU. When I run racon on my genome I get improved completeness due to polishing, but I also see that my telomeric regions (AAACCCT)n are removed. Is there a way to mask these regions from racon?

calvincicha commented 4 years ago

I see this has already been addressed in #126