search

isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
261 stars 48 forks source link

[bioparser::createParser] error #155

Open emmannaemeka opened 4 years ago

emmannaemeka commented 4 years ago

Hello, Please I had this error running racon

~/minimap2 -ax map-ont -t 20 ~/Pilon_22_09_19_flye_2x/Flye_pilon_2x.fasta. ~ 20190404.fq

terminate called after throwing an instance of 'std::invalid_argument' what(): [bioparser::createParser] error: unable to open file ~racon_flye_22_09_19_1x/…Flye_pilon_2x.sam!

rvaser commented 4 years ago

Hello, it appears that you passed the wrong path of the SAM file to Racon.

Best regards, Robert