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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
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wrapperscript cudaaligner problems #161

Closed Colorstorm closed 3 years ago

Colorstorm commented 4 years ago

Hi,

I have problems with the racon wrapper script and using racon NOT on a gpu.

The error is: racon: unrecognized option '--cudaaligner-batches'

The racon version is v1.4.13

racon_wrapper --split 2500 -t 16 -u test.reads.fastq test.ovl.paf test.fasta > wrapper_test.fasta
[RaconWrapper::run] preparing data with rampler
[RaconWrapper::run] total number of splits: 3841
[RaconWrapper::run] processing data with racon
/path/racon: unrecognized option '--cudaaligner-batches'

Thanks, Fabian

rvaser commented 4 years ago

Hello Fabian, this issue has been already fixed in commit https://github.com/lbcb-sci/racon/commit/31a3c92878d19a9ef31462193e6a7862e6fe1611 which is version 1.4.16. I did not publish a release yet.

Best regards, Robert

Colorstorm commented 4 years ago

Hi Robert,

Thanks a lot, then I will update it via git.

Cheers, Fabian