first push GPU version of racon

isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

https://github.com/lbcb-sci/racon

MIT License

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first push GPU version of racon #164

Closed jashwantraj92 closed 3 years ago

jashwantraj92 commented 4 years ago

Hi,

We reused an existing GPU implementation of Racon tool and modified it to suit our needs. We have tested this GPU version against a sample dataset and got considerable speed of about 45%. This effort is a part of Galaxy academic project at Penn State funded by NSF. We are open for feedback and kindly want this be pushed to the main upstream repository.

rvaser commented 4 years ago

I am not sure what exactly this PR accomplishes, the majority of files are build files tied to CMake?