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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
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Illegal Instruction #177

Open liweicheng0011 opened 3 years ago

liweicheng0011 commented 3 years ago

Hello. I used Minimap&Racon for assembly result correction, but error instruction was reported when using Racon. [racon::Polisher::initialize] loaded target sequences 0.048631 s [racon::Polisher::initialize] loaded sequences 22.398729 s [racon::Polisher::initialize] loaded overlaps 1.189384 s [racon::Polisher::initialize] aligning overlaps [====================] 51.486484 s [racon::Polisher::initialize] transformed data into windows 4.672835 s Illegal Instruction

What should I do?

rvaser commented 3 years ago

Hi, are you using the latest conda version of Racon? Try compiling from source on your machine (the error indicates that your CPU does not support SIMD instructions with which Racon was compiled).

Best regards, Robert

liweicheng0011 commented 3 years ago

Thanks for your reply. I am using the latest conda verions of Racon (v1.4.13) . I will try compiling from source on my machine.