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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
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Does a log file that is too large have an impact? #200

Open XK4959 opened 2 years ago

XK4959 commented 2 years ago

Hello, when I ran the following command, I got a very large log file: 2.log, below is a screenshot of its content (not intercepted is a regular repetition)

Run command：nohup /users/gaoxl/soft/miniconda3/bin/racon -t 20 /users/gaoxl/help/taijia/fhm-Assembly-2021.11.11/data/fastq/fastq_pass/fastq_pass/20211015_1658_5E_PAJ02360_23e77f3c/cr.fastq.gz ONTmin_IT0.paf /users/gaoxl/help/taijia/fhm-Assembly-2021.11.11/filter/purged.fa > ONTmin_IT1.fasta 2>2.log&

2.log： image

The entire log file is very large: 87M

XK4959 commented 2 years ago

image This is the end, and it was automatically killed by the system before it finished running.

rvaser commented 2 years ago

Hello, larger log files indicate that you are using an older Racon version. Please use the latest from bioconda (1.4.20).

Best regards, Robert