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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
269 stars 49 forks source link

how to resolve overlaps? #213

Open Saveli01 opened 2 years ago

Saveli01 commented 2 years ago

Hello, Thanks again for making this useful program.
I have successfully used the functions of Racon, but I have not been able to find a way to resolve overlaps. When encountering overlap regions, Racon inserts a gap between them. Maybe Racon can't actually output a fasta with the overlaps resolved, but I wanted to check with you before I gave up on this.
Any advice will be appreciated.

rvaser commented 2 years ago

Hi, can you please elaborate on "resolve overlaps"?

Best regards, Robert