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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
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installation on CentOS 7: 'Could NOT find ZLIB: Found unsuitable version "1.2.7", but required is at least "1.2.8"' #235

Closed hanrong-chen closed 1 year ago

hanrong-chen commented 1 year ago

Hello! I'm trying to install racon on CentOS 7. When I run cmake -DCMAKE_BUILD_TYPE=Release .. I get the following error:

CMake Error at /home/centos/cmake-3.26.0-rc6-linux-x86_64/share/cmake-3.26/Modules/FindPackageHandleStandardArgs.cmake:230 (message): Could NOT find ZLIB: Found unsuitable version "1.2.7", but required is at least "1.2.8" (found /usr/lib64/libz.so, ) Call Stack (most recent call first): /home/centos/cmake-3.26.0-rc6-linux-x86_64/share/cmake-3.26/Modules/FindPackageHandleStandardArgs.cmake:598 (_FPHSA_FAILURE_MESSAGE) /home/centos/cmake-3.26.0-rc6-linux-x86_64/share/cmake-3.26/Modules/FindZLIB.cmake:200 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) build/_deps/bioparser-src/CMakeLists.txt:22 (find_package)

I installed zlib 1.2.13 following these instructions but the error persists. I suspect I need to tell CMake where to find the library at compile time, but am unfamiliar how to do so. Would you know a solution for this? Thank you!

rvaser commented 1 year ago

Hello, maybe -DZLIB_LIBRARY=<path to library> -DZLIB_INCLUDE_DIR=<path to include> while running cmake.

You can also use racon through bioconda: https://anaconda.org/bioconda/racon.

Best regards, Robert