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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
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racon: invalid option -- 'L' #238

Open yeeus opened 1 year ago

yeeus commented 1 year ago

Hello, I am following the polishing method of Mc Cartney et al., 2022, whose doi is https://doi.org/10.1038/s41592-022-01440-3, where Racon's liftover branches were used(https://github.com/isovic/racon/tree/liftover). Here is the command: ${RACON} -t ${threads} ${in_dataset} ${out_falconc_sam} ${in_draft} -L ${out_racon_fasta} -S > ${out_racon_fasta}

But when I tried this script, I got an error racon: invalid option -- 'L'. It seems that this version the paper used was discarded, so I have the question that whether you would re-release that or never? And if you won't, can you tell me how to get the vcf file the script need?

Best wishes!

btrainee commented 9 months ago

I encountered the same situation，have you solved it ?

yeeus commented 9 months ago

I encountered the same situation，have you solved it ?

I didn't solve it and tried another method.