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isovic / racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
https://github.com/lbcb-sci/racon
MIT License
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Getting small contigs with long polyA and polyT stretches #76

Open kassammo opened 6 years ago

kassammo commented 6 years ago

Dear all,

I am doing an assembly of bacteria, and I am getting poly A stretch in my final contigs.

I have tried both with minimap and minimap2 and I am getting this strectch.

Any alternative to remove from my assembly?

Thanks,

Mohamed

rvaser commented 6 years ago

Hi Mohamed, could you please elaborate a bit more or provide an example so we better understand your query?

Best regards, Robert

rvaser commented 6 years ago

Ping @kassammo.