MAJOR CHANGES:
The major change to this project is the introduction of the pip package xenomake.
This minimizes the amount of configuration and specification of absolute file paths.
We no longer require you to download this repository
MINOR IMPROVEMENTS:
Downloading of genomes, star indices, and xengsort index available through cli
More robust error detection in project configuration stage to minimize amount of snakemake re-execution
xengsort included as conda install
ADDITIONAL FUNCTIONALITIES:
updated config file to better organize variables by variable type
added spatial modes for dbit-seq, visium, and seq-scope
added run mode arguments to customize how reads are handled in run
added config option to customize run_mode arguments and spatial_mode arguments
Xenomake 2.0.0
MAJOR CHANGES: The major change to this project is the introduction of the pip package xenomake. This minimizes the amount of configuration and specification of absolute file paths. We no longer require you to download this repository
MINOR IMPROVEMENTS:
ADDITIONAL FUNCTIONALITIES: