TrioCanu assembly input

[j23414]

Fix the internal filename conflict when passing through paternal_assembly.fasta and maternal_assembly.fasta separately.

[j23414]

• https://www.nextflow.io/docs/latest/script.html#rename-files

[j23414]

Use map and copyTo... turns out using renameTo turns the channel into 'true' or 'false' 😆

channel.fromPath("original.txt") | map {it -> it.copyTo("newfile.txt")} | process1

[j23414]

Fixed by running separate paternal_chand maternal_ch channels. And by adding an val(outdir) to the processes.