The index command should have an option such as --select-new when only new annotations for each data object are set to be the current annotation in ds:root. This means that any time the annotation found for a particular data object already existed for that data object in the index, that data object's current annotation is left as is rather than updated.
The
indexcommand should have an option such as--select-newwhen only new annotations for each data object are set to be the current annotation inds:root. This means that any time the annotation found for a particular data object already existed for that data object in the index, that data object's current annotation is left as is rather than updated.