Closed e-manduchi closed 9 years ago
I just released a new version that supports GSNAP. (sam2cov tag v0.0.5-beta)
Super thx!
Elisabetta, for now, you can set "STAR = TRUE" and it should work for GSNAP alignments. I will modify the config file for the next release.
Got it, thx.
I see that currently sam2cov only supports alignments made with RUM of STAR. Would it be possible to extend to alignments made with gsnap?