Open e-manduchi opened 9 years ago
For a given sample I have the 2,636,688 in the mapping_stats file for the number of UniqueFWDandREV which equals the number of UniqueFWDorREV.
However if I run the ngsutils command bamutils filter -mapped -eq NH:i 1
on the corresponding bam file, the reported number of retained alignments is so 5273384, thus 2636692 unique aligners (this is paired end).
For a given sample I have the 2,636,688 in the mapping_stats file for the number of UniqueFWDandREV which equals the number of UniqueFWDorREV.
However if I run the ngsutils command bamutils filter -mapped -eq NH:i 1
on the corresponding bam file, the reported number of retained alignments is so 5273384, thus 2636692 unique aligners (this is paired end).