itmat / rum

RNA-Seq Unified Mapper
http://cbil.upenn.edu/RUM
MIT License
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Reporting many novel exons with the same start or end coordinate #121

Open mdelaurentis opened 12 years ago

mdelaurentis commented 12 years ago

Occasionally we will see clusters of novel exons that all have the same start or end coordinate. For example, the following exons were all reported in a recent job:

chr2:98502473-98502483  novel
chr2:98502473-98502493  novel
chr2:98502473-98502495  novel
chr2:98502473-98502497  novel
chr2:98502473-98502498  novel
chr2:98502473-98502500  novel
chr2:98502473-98502501  novel
chr2:98502473-98502507  novel

I'm not sure if this is reallyan issue, but it seems like something we might want to investigate at some point.