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itmat / rum

RNA-Seq Unified Mapper
http://cbil.upenn.edu/RUM
MIT License
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Incorrect counts in mapping_stats file #166

Open mdelaurentis opened 11 years ago

mdelaurentis commented 11 years ago

A user reports inaccuracies in the mapping_stats.txt file:

RUM against mouse gives 0 mappings in stats file and 25 entries in RUM_Unique. When aligning against fish the mappings states 13 unique mappers while RUM_Unique contains 15. With fly I got 0 mappings in stats and 4 in RUM_Uniq.

...

I just checked the rat RUM_NU file and there are 100 distinct reads in the file (ie 100 reads that are unique from one another and yet each map to multiple locations in the genome). The mappings file lists 6 non-unique mappers.