itmat / rum

RNA-Seq Unified Mapper
http://cbil.upenn.edu/RUM
MIT License
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Error creating index from ensembl gtf and genome #176

Closed mdelaurentis closed 11 years ago

mdelaurentis commented 11 years ago

A user reported an issue where create_index_from_ensembl was failing. Before it failed, it produced some "undefined variable $chr" messages. It turns out that the regular expression the script used to parse the chromosome from the headers in the genome file was too strict. I fixed that in 2.0.5_05.