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itmat / rum

RNA-Seq Unified Mapper
http://cbil.upenn.edu/RUM
MIT License
26 stars 4 forks source link

Unbundle mdust, blat and bowtie from the package #183

Open mmokrejs opened 10 years ago

mmokrejs commented 10 years ago

I am trying to make a package for Gentoo Linux but find it awkward that the make fetches the binaries automagically for me. i have them in /usr/bin/ so no need to fetch some binaries, at all. Not only, Gentoo gatekeepers wouldn't accept such a package.

Would you please change the code in ./blib/lib/RUM/SystemCheck.pm ./blib/lib/RUM/BinDeps.pm so that the binaries are fetched only if they are not in $PATH? Ideally drop that altogether.

Thanks.