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itmat / rum

RNA-Seq Unified Mapper
http://cbil.upenn.edu/RUM
MIT License
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Reads naming #189

Closed OlgaVT closed 4 years ago

OlgaVT commented 4 years ago

Hi, I have tried RUM2 for RNA-Seq data, and in the output file all reads turned out to be renamed to "seq.1", "seq.2" etc. Is it possible to leave the names as they were in the original input files? Thank you!

greggrant commented 4 years ago

Hi sorry for the delay getting back to you. There is an option --perserve-names should achieve what you want. Please let us know if there's anything else we can help with. Thank you, Greg

On Fri, Nov 29, 2019 at 6:07 AM OlgaVT notifications@github.com wrote:

Hi, I have tried RUM2 for RNA-Seq data, and in the output file all reads turned out to be renamed to "seq.1", "seq.2" etc. Is it possible to leave the names as they were in the original input files? Thank you!

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OlgaVT commented 4 years ago

Thank you! I will try it.