install.packages("fs") fail in android(termux)

manikaran1993 commented 3 years ago

Latest R ~ $ pkg list-all r-base Listing... Done r-base/termux,now 4.0.3-1 aarch64 [installed]

Latest libicu

~ $ pkg list-all libicu Listing... Done libicu/stable,now 68.2-1 aarch64 [installed]

I am still getting error:

installing source package ‘fs’ ... package ‘fs’ successfully unpacked and MD5 sums checked using staged installation libs g++ -std=gnu++11 -I"/data/data/com.termux/files/usr/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/data/data/com.termux/files/usr/include -fpic -g -O2 -c dir.cc -o dir.o g++ -std=gnu++11 -I"/data/data/com.termux/files/usr/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/data/data/com.termux/files/usr/include -fpic -g -O2 -c error.cc -o error.o g++ -std=gnu++11 -I"/data/data/com.termux/files/usr/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/data/data/com.termux/files/usr/include -fpic -g -O2 -c file.cc -o file.o g++ -std=gnu++11 -I"/data/data/com.termux/files/usr/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/data/data/com.termux/files/usr/include -fpic -g -O2 -c fs.cc -o fs.o g++ -std=gnu++11 -I"/data/data/com.termux/files/usr/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/data/data/com.termux/files/usr/include -fpic -g -O2 -c getmode.cc -o getmode.o g++ -std=gnu++11 -I"/data/data/com.termux/files/usr/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/data/data/com.termux/files/usr/include -fpic -g -O2 -c id.cc -o id.o id.cc:109:17: error: use of undeclared identifier 'getpwent'; did you mean 'getgrent'? passwd pwd = getpwent(); ^~~~ getgrent /data/data/com.termux/files/usr/include/grp.h:55:22: note: 'getgrent' declared here static struct group getgrent(void) { return 0; } ^ id.cc:109:11: error: cannot initialize a variable of type 'passwd ' with an rvalue of type 'struct group ' passwd pwd = getpwent(); ^ ~~ g++ -std=gnu++11 -I"/data/data/com.termux/files/usr/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/data/data/com.termux/files/usr/include -fpic -g -O2 -c init.cc -o init.o id.cc:113:11: error: use of undeclared identifier 'getpwent'; did you mean 'getgrent'? pwd = getpwent(); ^~~~ getgrent /data/data/com.termux/files/usr/include/grp.h:55:22: note: 'getgrent' declared here static struct group getgrent(void) { return 0; } ^ id.cc:113:11: error: incompatible pointer types assigning to 'passwd ' from 'struct group ' pwd = getpwent(); ^~~~~~ 4 errors generated. make: ** [/data/data/com.termux/files/usr/lib/R/etc/Makeconf:177: id.o] Error 1 make: Waiting for unfinished jobs.... ERROR: compilation failed for package ‘fs’
removing ‘/data/data/com.termux/files/usr/lib/R/library/fs’

The downloaded source packages are in ‘/data/data/com.termux/files/usr/tmp/RtmpY154DW/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done Warning message: In install.packages("fs") : installation of package ‘fs’ had non-zero exit status

its-pointless commented 3 years ago

Yeah i have to patch fs to get it to work. Its required for use in tidyverse. So there is a version of it in that package.

its-pointless commented 3 years ago

I will upload the patch i use.

manikaran1993 commented 3 years ago

Can you please update once its done. Thanks alot

manikaran1993 commented 3 years ago

Hey, Any update on this issue?

its-pointless commented 3 years ago

apply these patches to fs. https://github.com/its-pointless/gcc_termux/blob/master/R-patches/rcran-fs-Makevars.patch https://github.com/its-pointless/gcc_termux/blob/master/R-patches/rcran-fs-id.cc.patch

kurokirasama commented 2 years ago

apply these patches to fs. https://github.com/its-pointless/gcc_termux/blob/master/R-patches/rcran-fs-Makevars.patch https://github.com/its-pointless/gcc_termux/blob/master/R-patches/rcran-fs-id.cc.patch

Hi, I tried applying those patches, but I got errors:

git apply rcran-fs-Makevars.patch --verbose --ignore-whitespace

rcran-fs-Makevars.patch:5: trailing whitespace.
HOST := 
error: corrupt patch at line 29

and

git apply rcran-fs-id.cc.patch --verbose --ignore-whitespace

error: corrupt patch at line 11

Can you help please?

its-pointless / gcc_termux

install.packages("fs") fail in android(termux) #120