When computing metrics using ANIMA and MetricsReloaded one can quickly notice that ANIMA is much faster probably because it is written in C++ whereas MetricsReloaded is pure Python. we gain better readability (python vs c++ code) at the cost of speed.
discussing with @valosekj, our wrapper script could be made faster by computing the metrics in parallel instead of a simple for as it is done now.
one idea: use multiprocessing ie spawn multiple workers on multiple subjects (just like the -jobs arg in sct_run_batch ?
When computing metrics using ANIMA and MetricsReloaded one can quickly notice that ANIMA is much faster probably because it is written in C++ whereas MetricsReloaded is pure Python. we gain better readability (python vs c++ code) at the cost of speed.
discussing with @valosekj, our wrapper script could be made faster by computing the metrics in parallel instead of a simple
foras it is done now.one idea: use multiprocessing ie spawn multiple workers on multiple subjects (just like the
-jobsarg insct_run_batch?