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ivadomed / model-spinal-rootlets

Deep-learning based segmentation of the spinal nerve rootlets
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Update folder structure for `r20240523` model #77

Closed valosekj closed 1 month ago

valosekj commented 1 month ago

The r20240523 has the following folder structure without the nnunet trainer folder:

model-spinal-rootlets_ventral_D106_r20240523
├── dataset.json
├── dataset_fingerprint.json
├── fold_all
│   ├── checkpoint_final.pth
│   ├── debug.json
│   ├── progress.png
│   ├── training_log_2024_4_8_10_34_06.txt
│   └── training_log_2024_4_9_11_20_14.txt
└── plans.json

To be compatible with https://github.com/spinalcordtoolbox/spinalcordtoolbox/pull/4618, we need to re-release the model with the nested folder (as done for model-spinal-rootlets_M5 in https://github.com/ivadomed/model-spinal-rootlets/releases/tag/r20240730):

model-spinal-rootlets_ventral_D106_r20240523
└── nnUNetTrainer_2000epochs__nnUNetPlans__3d_fullres
    ├── dataset.json
    ├── dataset_fingerprint.json
    ├── fold_all
    │   ├── checkpoint_final.pth
    │   ├── debug.json
    │   ├── progress.png
    │   ├── training_log_2024_4_8_10_34_06.txt
    │   └── training_log_2024_4_9_11_20_14.txt
    └── plans.json
valosekj commented 1 month ago

I directly updated the releases asset: https://github.com/ivadomed/model-spinal-rootlets/releases/tag/r20240523