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ivadomed / model_seg_ms_mp2rage

Model repository for MS lesion segmentation on MP2RAGE data from University of Basel
MIT License
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Benchmark on lesion segmentation #39

Closed uzaymacar closed 2 years ago

uzaymacar commented 2 years ago

Similar to #28, the goal is to have a benchmark on lesion segmenation wherein we compare our newly trained ivadomed lesion segmentation model to alternatives.

uzaymacar commented 2 years ago

The linked PR currently compares our lesion segmentation model to sct_deepseg_lesion. However, due to the vast differences between the mp2rage contrast and the t2 contrast (which the sct_deepseg_lesion model is trained on), we don't get a fair comparison. Therefore, we can focus our efforts on visually comparing the lesion segmentation predictions to the two raters' annotations as shown in the linked PR.