Consider 'hiding' the spinal cord cropping inside the MS lesion segmentation task

ivadomed / model_seg_ms_mp2rage

Model repository for MS lesion segmentation on MP2RAGE data from University of Basel

MIT License

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Consider 'hiding' the spinal cord cropping inside the MS lesion segmentation task #45

Open jcohenadad opened 2 years ago

jcohenadad commented 2 years ago

I am afraid that some users won't crop the spinal cord and will try to apply the MS lesion segmentation model directly on the full image, which would produce bad results.

Should we consider 'enforcing' spinal cord cropping, ie: doing a cascaded model of: SC segmentation & MS lesion segmentation?

We could still keep the SC cord segmentation model as as separate model, in case users want to only segment the cord.