issues
search
ivadomed
/
model_seg_ms_mp2rage
Model repository for MS lesion segmentation on MP2RAGE data from University of Basel
MIT License
2
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Update README with correct version of ivadomed OR expose the log file from your model folder
#33
jcohenadad
opened
2 years ago
0
Add image in the README
#32
jcohenadad
closed
2 years ago
1
Updated README with reproducibility steps and latest syntax
#31
uzaymacar
closed
2 years ago
0
Update the README with SC and lesion seg training & inference steps
#30
uzaymacar
closed
2 years ago
0
SC segmentation inference time performance (e.g. RAM) logging
#29
uzaymacar
closed
2 years ago
1
Benchmark on spinal cord segmentation
#28
uzaymacar
closed
2 years ago
5
`--segment` error for both models
#27
uzaymacar
closed
2 years ago
6
`ivadomed` input dimensions change of order compared to actual input dimensions (via `nibabel`)
#26
uzaymacar
closed
2 years ago
5
Change name of repository to `model_seg_lesion_mp2rage`
#25
jcohenadad
closed
2 years ago
1
Unified generation of clean repositories for SC seg and lesion seg
#24
uzaymacar
closed
2 years ago
0
Unify the generation of clean repositories
#23
jcohenadad
closed
2 years ago
0
Open new repository for model_seg_sc_mp2rage
#22
jcohenadad
closed
2 years ago
1
Use wandb.io for parameter comparison
#21
jcohenadad
opened
2 years ago
0
`ivadomed` configs for cascaded pipeline
#20
uzaymacar
closed
2 years ago
2
`ivadomed` configs for training spinal cord segmentation
#19
uzaymacar
closed
2 years ago
11
Preparing data in preprocessing for SC segmentation task
#18
uzaymacar
closed
2 years ago
2
Documentation for centerline method params
#17
uzaymacar
closed
2 years ago
0
Implement torchIO and the necessary data augmentation strategies in ivadomed
#16
jcohenadad
closed
2 years ago
3
new cnn input params for centerline
#15
jcohenadad
closed
2 years ago
0
Document procedure for manually fixing SC segmentations
#14
jcohenadad
opened
2 years ago
2
Inconsistencies between raters on lesion segmentation
#13
jcohenadad
closed
1 year ago
8
Added Lesion QC for Preprocessing
#12
uzaymacar
closed
2 years ago
1
`ivadomed` configs for training lesion segmentation
#11
uzaymacar
closed
2 years ago
18
Centerline method CNN `sct_deepseg_sc` fails with certain subjects
#10
uzaymacar
closed
2 years ago
2
Task list to finalize this project
#9
jcohenadad
closed
1 year ago
1
Preparing data and train model to detect/segment spinal cord
#8
jcohenadad
opened
2 years ago
6
Clean Data Processed Folder in Preprocessing
#7
uzaymacar
closed
2 years ago
0
Add procedure for manual correction
#6
jcohenadad
closed
2 years ago
1
Aggregation and Cropping in Preprocessing
#5
uzaymacar
closed
2 years ago
0
Creating a consensus GT
#4
uzaymacar
closed
2 years ago
0
Preprocessing optimization
#3
jcohenadad
closed
1 year ago
2
After preprocessing, generate a 'clean' dataset for training purpose
#2
jcohenadad
closed
2 years ago
0
Find good strategy to 'hide' the preprocessing at inference time
#1
jcohenadad
opened
2 years ago
0
Previous