Update QC report command and JSON standard in lesion segmentation protocol

ivadomed / ms-lesion-agnostic

Deep Learning contrasts "agnostic" tool for MS lesion segmentation in the spinal cord

MIT License

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Open plbenveniste opened 2 months ago

plbenveniste commented 2 months ago

Following the discussion in this comment, I am opening this issue to not forget about:

updating the SCT commands to QC MS lesion segmentation: waiting for SCT v6.3
update the JSON convention for the lesion segmentation files: waiting for refactoring of canproco.

The modifications need to be done in the lesion_segmentation_protocol.md file.