ivanek Gviz issues - Githubissues

ivanek / Gviz

This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.

https://bioconductor.org/packages/Gviz/

Artistic License 2.0

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issues

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Support for Discrete Color Mapping in Heatmap DataTrack for Copy Number Visualization

#94 davidcoffey opened 1 week ago
0
The direction of a single exon gene

#93 rejo27 opened 2 months ago
2
Error in grid.Call.graphics(C_xspline, x$x, x$y, x$shape, x$open, x$arrow, : non-finite control point in Xspline

#92 emidalla opened 4 months ago
0
log scale without transformation?

#91 jayoung opened 7 months ago
1
DataTrack - undesired behavior when using transformation and windowing

#90 jayoung opened 7 months ago
2
Is there a parameter to adjust the height of the heat map?

#89 SEvisual closed 5 months ago
0
Text color in title panel

#88 damisiak opened 1 year ago
0
UcscTrack: track issue

#87 jennyujin22 opened 1 year ago
5
GeneRegionTrack errror

#86 jarchana09 opened 1 year ago
0
Add text to a Gviz plot

#85 foriin opened 1 year ago
0
AlignmentsTrack error

#84 BenxiaHu closed 1 year ago
3
Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie even with local .ucscCache file

#83 sakuramodokich closed 1 year ago
12
plotTracks throwing an error, cannot find 'x' on as.data.frame

#82 mwodring closed 1 year ago
5
Problem creating AnnotationTrack from minimal BED file

#81 jedpe closed 1 year ago
1
Problem using the new reference CHM13

#80 sara77777777 opened 1 year ago
1
No go: UcscTrack() with start="chromStart"

#79 rafalcode closed 1 year ago
6
There doesn't seem to be any cytoband data available for genome 'hg38' at UCSC or the service is temporarily down. Trying to fetch the chromosome length data.

#78 ChristianRohde closed 1 year ago
2
groups factor in histogram/horizon datatrack doesnt change its color

#77 AmhedVargas closed 1 year ago
2
request for color coding of alignmentstrak by insert size and interchromosomal mapping etc

#76 shinchuma opened 1 year ago
1
speed related issue

#75 ammawla opened 1 year ago
0
Incorrect labeling dot plot using DataTrack

#74 powerhorse1986 closed 1 year ago
1
Reflecting coverage differences when ploting several AlignmentsTracks using plotTrack

#73 JesseRop closed 1 year ago
3
IdeogramTrack() can't import chromosome length

#72 timpeters82 closed 1 year ago
1
gcContent DataTrack layer from vignette failing

#71 DanielEWeeks closed 1 year ago
1
BiomartGeneRegionTrack generated an object contained wrong end information

#70 powerhorse1986 closed 1 year ago
1
gene symbols out of the picture

#69 emauryg opened 2 years ago
0
method for function 'tolower': Unable to identify extension for file ''

#68 yonniejon closed 2 years ago
1
Unable to adjust the length of tracks' title region.

#67 Han-26 opened 2 years ago
0
How to plot only the gene ( not the transcripts) using GeneRegionTrack?

#66 Sneha-bioinfo closed 2 years ago
2
plotTracks() sizes error when trackList contains OverlayTrack()

#65 robert-gnuegge closed 2 years ago
1
nanopore bam file failed to display using plotTracks

#64 yinshiyi closed 2 years ago
1
yTicksAt not functional for DataTrack

#63 HeyLifeHD closed 2 years ago
6
Y axis and track name disappear for nested OverlayTrack

#62 robert-gnuegge closed 2 years ago
3
alignmentsTrack: SNP histogram does not match pileup

#61 nick-youngblut opened 2 years ago
3
DataTrack: wig import error

#60 nick-youngblut closed 2 years ago
1
Parallel processing support, speed related issue

#59 ammawla closed 1 year ago
0
Inconsistent Indel annotation with IGV

#58 ctl43 closed 2 years ago
1
Feature request: Display softclip areas as IGV does

#57 dformoso opened 3 years ago
0
Display alignments one per row, possibly sorted

#56 Balays opened 3 years ago
1
Details AnnotationTrack swap densityplot and connectors

#55 lorbaer opened 3 years ago
0
Use expression/bquote functions with AnnotationTrack group/feature/id

#54 Billy-lm opened 3 years ago
0
Modify BiomartGeneRegionTrack parameters

#53 eggrandio closed 2 years ago
4
AlignmentsTrack: show all bases

#52 ariloytynoja opened 3 years ago
0
Alignments error

#51 BenxiaHu closed 2 years ago
2
request for GenomeAxisTrack: add "bp" to small scale bars

#50 jayoung opened 3 years ago
0
GenomeAxisTrack hangs with large negative 'from'

#49 jayoung closed 3 years ago
2
H3K4Me3 not working: Error fetching data from UCSC

#48 sebastian-li closed 3 years ago
1
Missing dependency: xml2

#47 HenrikBengtsson closed 3 years ago
1
y ticks not showing correct values for custmized aggregation function

#46 ruqianl closed 2 years ago
1
How to create IdeogramTrack for Arabidopsis

#45 aleksandrPi opened 3 years ago
2