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j-andrews7 / VAMPIRE

Variant and Epigenetic anNotation for Underlying Significance and Regulation
MIT License
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Change format from single VCFs to multi-sample VCF instead. #15

Closed j-andrews7 closed 8 years ago

j-andrews7 commented 8 years ago

This will drastically simplify output and trying to stick the z-scores for enhancer activity and gene expression in the output.

It will also drastically improve performance for the motif checking

j-andrews7 commented 8 years ago

tf_expression.py, activity.py, and gene_expression.py are the files that will have to be reworked for this.

j-andrews7 commented 8 years ago

This has been handled for tf_expression.py, activity.py, and will be handled for gene_expression.py, which will borrow heavily from activity.py.