Sequence longer than PWM bug.

j-andrews7 / VAMPIRE

Variant and Epigenetic anNotation for Underlying Significance and Regulation

MIT License

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Sequence longer than PWM bug. #22

Closed j-andrews7 closed 7 years ago

j-andrews7 commented 8 years ago

In motifs.py, score_motif function sometimes throws an error. Basically, put in a noisy bypass for now, but I'm sure it's skipping motifs in the database because of it. Not sure what the issue is, need to debug.

j-andrews7 commented 8 years ago

I think this might be an issue with chromosome order or something, because if you only use the first ~1000 lines of a file (all one chromosome), it seems to work fine.

Crumbs350 commented 8 years ago

see issue #35. I think they are potentially related.

j-andrews7 commented 7 years ago

Pretty sure this has been fixed. See issue #35.