j-andrews7 awesome-bioinformatics-benchmarks issues

j-andrews7 / awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

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https://academic.oup.com/bib/article/23/1/bbab417/6400501

#64 j-andrews7 opened 10 months ago
0
https://www.biorxiv.org/content/10.1101/2023.12.26.572833v1?rss=1

#63 j-andrews7 opened 10 months ago
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https://www.biorxiv.org/content/10.1101/2023.12.22.573067v1?rss=1

#62 j-andrews7 opened 10 months ago
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https://rnajournal.cshlp.org/content/29/12/1839.long - APAeval - identification and quantification of alternative polyadenylation sites from bulk RNA-seq data

#61 SamBryce-Smith opened 10 months ago
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Fresh batch

#60 j-andrews7 closed 10 months ago
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https://www.nature.com/articles/s41598-019-46875-5

#59 j-andrews7 closed 10 months ago
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https://www.nature.com/articles/s41587-022-01336-9

#58 j-andrews7 closed 10 months ago
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https://www.biorxiv.org/content/10.1101/2023.11.15.564963v1?rss=1

#57 j-andrews7 closed 10 months ago
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https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1720-5

#56 j-andrews7 closed 1 year ago
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6171491/

#55 j-andrews7 closed 10 months ago
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https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-020-00342-y

#54 j-andrews7 closed 11 months ago
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https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-01972-x

#53 j-andrews7 closed 10 months ago
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https://www.nature.com/articles/s41592-023-01814-1

#52 j-andrews7 closed 10 months ago
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https://elifesciences.org/articles/71994

#51 j-andrews7 closed 10 months ago
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New stuff

#50 j-andrews7 closed 1 year ago
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https://www.nature.com/articles/s41467-021-23778-6

#49 j-andrews7 closed 10 months ago
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GitHub Actions: Validate MD Links

#48 jake-steele closed 1 year ago
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https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8565305/

#47 j-andrews7 opened 1 year ago
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https://www.biorxiv.org/content/10.1101/2022.05.09.490241v1

#46 j-andrews7 opened 2 years ago
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https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02648-4

#45 j-andrews7 opened 2 years ago
0
https://www.nature.com/articles/s41598-020-76881-x

#44 j-andrews7 opened 2 years ago
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https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02552-3

#43 j-andrews7 opened 2 years ago
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https://www.sciencedirect.com/science/article/pii/S2001037021004499?via%3Dihub

#42 j-andrews7 opened 2 years ago
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https://academic.oup.com/bib/article/22/2/1694/5753843

#41 j-andrews7 opened 3 years ago
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annotate for github links

#40 leipzig closed 3 years ago
2
GSA

#39 leipzig closed 3 years ago
1
Update README.md

#38 leipzig closed 3 years ago
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Added benchmarking theory section and two relevant papers

#37 leipzig closed 3 years ago
1
Longread epi

#36 leipzig opened 3 years ago
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https://www.nature.com/articles/s41592-018-0254-1

#35 j-andrews7 opened 3 years ago
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Benchmarking small-variant genotyping in polyploids

#34 leipzig opened 3 years ago
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need "live benchmarking" section

#33 leipzig closed 10 months ago
2
need meta section

#32 leipzig closed 3 years ago
3
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03934-3

#31 leipzig opened 3 years ago
0
https://www.biorxiv.org/content/biorxiv/early/2021/02/12/2021.02.11.430775.full.pdf

#30 leipzig opened 3 years ago
0
https://www.nature.com/articles/s41592-019-0372-4

#29 j-andrews7 opened 3 years ago
0
https://www.mdpi.com/1422-0067/21/5/1720

#28 leipzig opened 3 years ago
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https://www.nature.com/articles/nmeth.4325

#27 j-andrews7 opened 3 years ago
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https://www.future-science.com/doi/10.2144/btn-2019-0105

#26 j-andrews7 closed 1 year ago
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https://doi.org/10.1186/s13059-018-1596-9

#25 j-andrews7 closed 1 year ago
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https://academic.oup.com/nargab/article/2/3/lqaa052/5877814

#24 j-andrews7 closed 1 year ago
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https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-1308-8

#23 j-andrews7 closed 4 years ago
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https://www.biorxiv.org/content/10.1101/2020.01.10.897116v1

#22 j-andrews7 closed 4 years ago
0
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1900-3

#21 j-andrews7 closed 4 years ago
1
https://www.nature.com/articles/s41467-017-00050-4

#20 j-andrews7 opened 4 years ago
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https://academic.oup.com/gigascience/article/8/5/giz039/5488105

#19 leipzig closed 4 years ago
0
add Pei et al Benchmarking variant callers in next-generation and third-generation sequencing analysis to Variant Callers

#18 leipzig closed 4 years ago
1
Add ATAC-Seq Normalisation Methods

#17 shangguandong1996 closed 4 years ago
1
Update README.md

#16 leipzig closed 4 years ago
1
added Kaszubinski et al

#15 leipzig closed 4 years ago
3