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jackbibby1
/
SCPA
R package for pathway analysis in scRNA-seq data
https://jackbibby1.github.io/SCPA/
GNU General Public License v3.0
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Trying to retrive the genes that are being used for each pathway in SCPA compare_pathways
#82
yowe21
closed
3 days ago
2
FC calculation in compare_pathways()
#81
neogilab
closed
12 hours ago
3
Error reproducing step in "Systems level tissue comparison" tutorial
#80
JonasDBM
closed
2 months ago
2
Must be even number of elements/adding ghost value error
#78
hbussan
closed
2 months ago
8
Interpreting and reporting significant Qvalues
#77
MAGBP
closed
3 months ago
2
error x$Genes: $ operator is invalid for atomic vectors
#76
INeedCNS
closed
2 months ago
1
Error installing SCPA
#75
nikolasgiannak
closed
4 months ago
6
Extracting genes from scpa ouput
#74
cdkodira
closed
2 months ago
1
Odd result in pseudotime
#73
Umaarasu
closed
2 months ago
6
compare_seurat AND extract_seurat give error
#72
francescopatane96
closed
4 months ago
7
Error when installing: package 'multicross' is not available
#71
r-melo
closed
5 months ago
2
installation of SCPA fails, because 'crossmatch' is unavailable.
#70
MelanieRN
closed
5 months ago
5
error in evaluating the argument 'mdm' in selecting a method for function 'nonbimatch'
#69
BenJCQuah
closed
6 months ago
9
Invalid size argument when comparing spots in Visium data
#68
r-melo
closed
7 months ago
5
Error in as.matrix(Seurat::GetAssay(seu_obj, assay)@data) : no slot of name "data" for this object of class "Assay5"
#67
tumorscholar
closed
7 months ago
11
Multicross no longer valid for New R Versions
#66
JyoRoy21
closed
8 months ago
3
Input Data
#65
AlexisFon
closed
8 months ago
1
Installation failed
#64
ryshi06
closed
8 months ago
1
Two questions...
#63
hsiowa2
closed
9 months ago
4
Error in install
#62
Nessetti
closed
9 months ago
2
Error in dplyr::arrange, object 'qval' not found while comparing two seurat objects
#61
Hainajin
closed
6 months ago
14
Issue with "homemade" .csv file
#60
AlexisFon
closed
10 months ago
10
Cannot install SCPA Successfully
#59
shamer3
closed
10 months ago
3
Cannot run load the SCPA library
#58
LilianGomes
closed
10 months ago
7
how to query other GSEA databases (for mouse)
#57
BartBryant
closed
1 year ago
7
Error install SCPA on R 4.3.1
#56
camilla0801
closed
1 year ago
2
SCPA comparsion (seurat object)
#55
BartBryant
closed
1 year ago
6
can't install SCPA package
#54
BartBryant
closed
1 year ago
3
SCT vs RNA assay with a Seurat Object
#53
troks27
closed
1 year ago
1
Output with many identical Qvalues and many NAs for FC
#52
troks27
closed
10 months ago
5
Threshold QVal
#51
je71xusa
closed
1 year ago
2
combined_metabolic_pathways.csv
#50
Yuvalyos
closed
1 year ago
4
Pathway expression
#49
rvalieris
closed
1 year ago
2
Pseudobulking
#47
Nusob888
closed
1 year ago
2
Define pathways and run comparison
#46
shamer3
closed
1 year ago
8
Issues getting any packages to install
#45
shamer3
closed
1 year ago
3
Package Installation Issues
#44
shamer3
closed
1 year ago
3
Error in utils::download SCPA
#43
deepdiver25
closed
1 year ago
5
Remotes multicross
#42
jackbibby1
closed
1 year ago
0
remove require
#41
jackbibby1
closed
1 year ago
0
Improve gmt usage
#40
jackbibby1
closed
1 year ago
0
Improve gmt usage
#39
jackbibby1
closed
1 year ago
0
Get genes associated with pathway terms
#38
ayeTown
closed
1 year ago
12
combined_metabolic_pathways. csv for mice?
#37
liyan910117
closed
1 year ago
1
speed up computation with parallel and multi-cores
#36
quyaingo
closed
1 year ago
4
V1.5.1
#35
jackbibby1
closed
1 year ago
1
downsample in compare_seurat
#34
quyaingo
closed
1 year ago
6
Analysis across multiple experiments
#33
deniando
closed
1 year ago
2
Merge parallel scripts
#32
jackbibby1
closed
1 year ago
0
parallel implementation
#31
jiwen90
closed
1 year ago
11
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