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jackstanek / FASTA-concatenator

Concatenates exons in tabular genetic data, and then spits fierce FASTA and tabular output.
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lengths in tabular file #4

Open rksplan opened 8 years ago

rksplan commented 8 years ago

Hi Jack,

In the output tabular file, the lengths don't appear to be correct? Using the large input dataset, the length for the first transcript (TCONS_00000024) is shown to be 966, when it should actually be 1376; ((stop-start)+1) = (1283294-1281919)+1.

Also, many of the lengths are shown as 0. (for single exon transcripts) Also, for some reason there are two 'length' columns?

Thanks, RKS

jackstanek commented 8 years ago

I think it should be fixed now. The lengths appear to be correct and there are no more entries with length 0. Let me know if there are any more bugs, I'm sure there are still a few hiding in there.

-Jack