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jackwasey / icd

Fast ICD-10 and ICD-9 comorbidities, decoding and validation in R. NB use main instead of master for default branch.
https://jackwasey.github.io/icd/
GNU General Public License v3.0
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get_icd10who2016() throwing lexical error #179

Open nicolaroberts opened 5 years ago

nicolaroberts commented 5 years ago

I have been trying to get the WHO 2016 ICD 10 codes, with the function get_icd10who2016(), but am getting the following error:

Error: lexical error: invalid char in json text. <!DOCTYPE html PUBLIC "-//W3C// (right here) ------^

my R session info was:

`

devtools::session_info()

  • Session info ------------------------------------------------------------------------------------------------------- setting value
    version R version 3.5.3 (2019-03-11) os Windows 10 x64
    system x86_64, mingw32
    ui RStudio
    language (EN)
    collate English_Australia.1252
    ctype English_Australia.1252
    tz Australia/Sydney
    date 2019-06-17

`

jackwasey commented 5 years ago

Thanks for report. I have a fix for WHO codes on Windows, about to go to CRAN, but I think this is a different issue. Are you able to browse the WHO ICD-10 codes from your location? Also please let me know your platform, Windows/macOS/Linux version, R version, and if you have CRAN or Github ice installed. Thanks again, Jack

On Jun 17, 2019, at 2:27 AM, nicolaroberts notifications@github.com wrote:

I have been trying to get the WHO 2016 ICD 10 codes, with the function get_icd10who2016(), but am getting the following error:

Error: lexical error: invalid char in json text. <!DOCTYPE html PUBLIC "-//W3C// (right here) ------^

my R session info was:

`> devtools::session_info()

Session info ------------------------------------------------------------------------------------------------------- setting value version R version 3.5.3 (2019-03-11) os Windows 10 x64 system x86_64, mingw32 ui RStudio language (EN) collate English_Australia.1252 ctype English_Australia.1252 tz Australia/Sydney date 2019-06-17

Packages ----------------------------------------------------------------------------------------------------------- package version date lib source assertthat 0.2.1 2019-03-21 [1] CRAN (R 3.5.3) backports 1.1.4 2019-04-10 [1] CRAN (R 3.5.3) callr 3.2.0 2019-03-15 [1] CRAN (R 3.5.3) cli 1.1.0 2019-03-19 [1] CRAN (R 3.5.2) crayon 1.3.4 2017-09-16 [1] CRAN (R 3.5.2) curl 3.3 2019-01-10 [1] CRAN (R 3.5.2) desc 1.2.0 2018-05-01 [1] CRAN (R 3.5.3) devtools 2.0.2 2019-04-08 [1] CRAN (R 3.5.3) digest 0.6.19 2019-05-20 [1] CRAN (R 3.5.3) fs 1.3.1 2019-05-06 [1] CRAN (R 3.5.3) glue 1.3.1 2019-03-12 [1] CRAN (R 3.5.3) httr 1.4.0 2018-12-11 [1] CRAN (R 3.5.2) icd 4.0.6 2019-05-07 [1] CRAN (R 3.5.3) jsonlite 1.6 2018-12-07 [1] CRAN (R 3.5.2) magrittr 1.5 2014-11-22 [1] CRAN (R 3.5.2) memoise 1.1.0 2017-04-21 [1] CRAN (R 3.5.3) pkgbuild 1.0.3 2019-03-20 [1] CRAN (R 3.5.3) pkgload 1.0.2 2018-10-29 [1] CRAN (R 3.5.3) prettyunits 1.0.2 2015-07-13 [1] CRAN (R 3.5.2) processx 3.3.1 2019-05-08 [1] CRAN (R 3.5.3) ps 1.3.0 2018-12-21 [1] CRAN (R 3.5.2) R6 2.4.0 2019-02-14 [1] CRAN (R 3.5.2) rappdirs 0.3.1 2016-03-28 [1] CRAN (R 3.5.3) Rcpp 1.0.1 2019-03-17 [1] CRAN (R 3.5.3) remotes 2.0.4 2019-04-10 [1] CRAN (R 3.5.3) rlang 0.3.4 2019-04-07 [1] CRAN (R 3.5.3) rprojroot 1.3-2 2018-01-03 [1] CRAN (R 3.5.2) rstudioapi 0.10 2019-03-19 [1] CRAN (R 3.5.3) sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 3.5.2) testthat 2.1.1 2019-04-23 [1] CRAN (R 3.5.3) usethis 1.5.0 2019-04-07 [1] CRAN (R 3.5.3) withr 2.1.2 2018-03-15 [1] CRAN (R 3.5.2) `

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nicolaroberts commented 5 years ago

Hi Jack, this problem was on Windows, R version 3.5.3 with the latest CRAN version of icd (4.0.6). I thought it might be the firewall at work but it still persisted when I connected to the general open wifi. I tried it again on my MacOS at home and it worked perfectly on the mac!