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jacoblevine / PhenoGraph

Subpopulation detection in high-dimensional single-cell data
http://www.c2b2.columbia.edu/danapeerlab/html/phenograph.html
MIT License
135 stars 70 forks source link

Phenograph seed no. and csv export #25

Open Malvan23 opened 1 year ago

Malvan23 commented 1 year ago

Hi, I have been having some issues with the Windows versions 1.75 and 1.76.

  1. Phenograph: setting a seed# does not always show up and goes to running phenograph immediately after selecting the number of neighbours.
  2. Export gates as cvs rarely works and if it does it take a very long time.

I only use underscore in my folders name, so I hope it is not causing any issues related to this.

Any feedback is much appreciated!

M.