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jade-cheng / ohana

mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
http://jade-cheng.com/ohana/
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Cannot run some ohana commands #9

Closed MrLocuace closed 5 years ago

MrLocuace commented 5 years ago

Dear Jade, I am trying to run selscan/ohana in a remote server. I installed it, as well as openblas. I have a .ped file but I am not able to convert it to dgm format using ohana. I am doing the following (with and without providing the path to ohana):

/data/me/softwares/ohana convert ped2dgm /data/me/selscan/data/mydata.ped \  /data/me/selscan/data/g.dgm

However, I get:

Command 'convert' not found, but can be installed with:

apt install imagemagick-6.q16
apt install graphicsmagick-imagemagick-compat apt install imagemagick-6.q16hdri

I thought "convert" was an ohana command, so I am not sure why am I getting this. Any idea of what I am doing wrong? Thanks very much

MrLocuace commented 5 years ago

Problem solved. It was a small mistake